Dataset

HaSNPV-AC53 Genotyping and Abundance Datasets

Queensland University of Technology
Noune, Christopher ( Contributor ) Hauxwell, Caroline ( Contributor )
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ctx_ver=Z39.88-2004&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Adc&rfr_id=info%3Asid%2FANDS&rft_id=info:doi10.4225/09/595f00367d2cf&rft.title=HaSNPV-AC53 Genotyping and Abundance Datasets&rft.identifier=http://dx.doi.org/10.4225/09/595f00367d2cf &rft.publisher=Queensland University of Technology&rft.description=Datasets described in this record refer to chapters 7 and 9 of the thesis 'Dynamics, Diversity and Evolution of Baculoviruses' by Christopher Noune. Chapter 7 - The 'Time Course BRO-A Abundances' and 'Time Course Distance Matrix' dataset contains, nucleotide similarity, raw read counts and relative abundances of genotypes identified with the HaSNPV-AC53 isolate during the infection cycle. Genotypes were identified using MetaGaAP and are available for download in the 'Baculovirus Genotyping Database'. MetaGaAP can be downloaded from https://github.com/CNoune/IMG_pipelines. Chapter 9 - The Cluster datasets contain the k-means clustering of genotypes and relative abundances identified within the HaSNPV-AC53 isolate and selection pressured derivied strains. Polymorphisms were identified using the GATK HaplotypeCaller. &rft.creator=Noune, Christopher &rft.creator=Hauxwell, Caroline &rft.date=2017&rft.edition=1&rft.relation=http://eprints.qut.edu.au/view/person/Hauxwell,_Caroline.html &rft.relation=http://eprints.qut.edu.au/view/person/Noune,_Christopher.html &rft.coverage=152.991212,-27.335337&rft_rights=© Christopher Noune & Caroline Hauxwell, 2017 &rft_rights=Creative Commons Attribution-No Derivatives 3.0 http://creativecommons.org/licenses/by-nd/4.0/&rft_subject=Ha Snpv-Ac53 &rft_subject=Baculovirus&rft_subject=Meta Ga Ap &rft.type=dataset&rft.language=English Access the data

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Creative Commons Attribution-No Derivatives 3.0
http://creativecommons.org/licenses/by-nd/4.0/

© Christopher Noune & Caroline Hauxwell, 2017

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Contact Information

Postal Address:
Associate Professor Caroline Hauxwell

caroline.hauxwell@qut.edu.au

Full description

Datasets described in this record refer to chapters 7 and 9 of the thesis 'Dynamics, Diversity and Evolution of Baculoviruses' by Christopher Noune.

Chapter 7 - The 'Time Course BRO-A Abundances' and 'Time Course Distance Matrix' dataset contains, nucleotide similarity, raw read counts and relative abundances of genotypes identified with the HaSNPV-AC53 isolate during the infection cycle. Genotypes were identified using MetaGaAP and are available for download in the 'Baculovirus Genotyping Database'. MetaGaAP can be downloaded from https://github.com/CNoune/IMG_pipelines.

Chapter 9 - The Cluster datasets contain the k-means clustering of genotypes and relative abundances identified within the HaSNPV-AC53 isolate and selection pressured derivied strains. Polymorphisms were identified using the GATK HaplotypeCaller.

Data time period: 07 07 0018 to 10 08 0015

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152.991212,-27.335337

152.991212,-27.335337

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