Software

HOSLIM Python program for the analysis of Hydropathic, Order-promoting, Short Linear Motifs (HO-SLiMs)

Commonwealth Scientific and Industrial Research Organisation
Raynes, Jared ; Holt, Carl ; Carver, John
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CSIRO Open Source Software Licence v1.0 (Based on MIT/BSD Open Source Licence)
https://confluence.csiro.au/pages/viewpage.action?pageId=267124796

All Rights (including copyright) CSIRO 2019.

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Data is accessible online and may be reused in accordance with licence conditions

Brief description

Command-line Python program for the automated analysis of Hydropathic, Order-promoting, Short Linear Motifs (HO-SLiMs) in proteins.

Data time period: 2018-01-01 to 2019-01-01

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Subjects
Biochemistry and Cell Biology | Biological Sciences | Proteomics and Intermolecular Interactions (Excl. Medical Proteomics) | Python | casein | intrinscially disordered proteins | milk | protein |

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Link to Github Repo

uri : https://github.com/jaredraynes/HOSLIM

Publication using analysis tool

doi : https://doi.org/10.1002/bip.23319

Holt, C.; Raynes, J. K.; Carver, J. A. Sequence Characteristics Responsible for Protein-Protein Interactions in the Intrinsically Disordered Regions of Caseins, Amelogenins, and Small Heat-Shock Proteins. Biopolymers 2019, 0 (0), e23319. https://doi.org/10.1002/bip.23319.

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